Problem has been solved. I figured out something so simple, turns out they are false positives. All the erroed files were from the Firefox Profile and I figured out you should not be browsing while doing CHKDSk. It is what caused the problems, I tested it out. I did CHKDSK 2 times while browsing and I got the errors and twice without browsing and everything was fine.

Yesterday my C:\ Drive went dead I managed to get it working using CHKDSK thry Recovery Console, I used the Maxtor HDD Tester Software and it said the HDD was dying, since I got it to work, I booted it up, opened up True Image and used the Clone Feature of True Image to make clone of it to my other HDD. I am now using the new HDD I tested it using the Maxtor HDD Tester and it said it was working perfectly fine, but I seem to have a weird problem, I did a CHKDSK C: and I got errors so I ran CHKDSK C: /f to fix it but when I restarted and it did the test it found nothing, so I ran CHKDSK C: few times and this is what I got.

C:\Documents and Settings\User>CHKDSK C:
The type of the file system is NTFS.
Volume label is System.

WARNING! F parameter not specified.
Running CHKDSK in read-only mode.

CHKDSK is verifying files (stage 1 of 3)...
File verification completed.
CHKDSK is verifying indexes (stage 2 of 3)...
Index verification completed.
CHKDSK is recovering lost files.
Recovering orphaned file COOKIE~1.MOZ (19788) into directory file 10093.
Recovering orphaned file cookies.txt.moztmp (19788) into directory file 10093.
CHKDSK is verifying security descriptors (stage 3 of 3)...
Security descriptor verification completed.
CHKDSK is verifying Usn Journal...
Usn Journal verification completed.
CHKDSK discovered free space marked as allocated in the
master file table (MFT) bitmap.
Correcting errors in the Volume Bitmap.
Windows found problems with the file system.
Run CHKDSK with the /F (fix) option to correct these.

80035796 KB total disk space.
13050268 KB in 50964 files.
19424 KB in 6255 indexes.
0 KB in bad sectors.
165088 KB in use by the system.
65536 KB occupied by the log file.
66801016 KB available on disk.

4096 bytes in each allocation unit.
20008949 total allocation units on disk.
16700254 allocation units available on disk.

---

C:\Documents and Settings\User>CHKDSK
The type of the file system is NTFS.
Volume label is System.

WARNING! F parameter not specified.
Running CHKDSK in read-only mode.

CHKDSK is verifying files (stage 1 of 3)...
File verification completed.
CHKDSK is verifying indexes (stage 2 of 3)...
Index verification completed.
CHKDSK is recovering lost files.
CHKDSK is verifying security descriptors (stage 3 of 3)...
Security descriptor verification completed.
CHKDSK is verifying Usn Journal...
Repairing Usn Journal file record segment.
Usn Journal verification completed.
CHKDSK discovered free space marked as allocated in the
master file table (MFT) bitmap.
Correcting errors in the Volume Bitmap.
Windows found problems with the file system.
Run CHKDSK with the /F (fix) option to correct these.

80035796 KB total disk space.
13051000 KB in 50972 files.
19432 KB in 6255 indexes.
0 KB in bad sectors.
165088 KB in use by the system.
65536 KB occupied by the log file.
66800276 KB available on disk.

4096 bytes in each allocation unit.
20008949 total allocation units on disk.
16700069 allocation units available on disk.
-----

I ran it twice and different problems came up, I ran it once more this time no problems. This is very weird, I do not know what it going on, I am thinking this is due to the Cloning from a dead HDD or what is going on?

If you can help that will be great, Thanks.

This post has been edited by Dark One 123: Sep 30 2006, 11:12 AM