So the problem is
I couldnt get into safe mode so I changed the msconfig to safeboot and then cleaned the viruses.
THEN I put the repair cd in to repair windows without changing the msconfig back.. and because I did that the repair cant finish because the system keeps going into safe mode. I cant figure out how to finish the repair and get out of safemode.
I tried dos and bootcfg... it read as a bad command